The following is a database of tutorials about topics related to programming and computational biology. Feel free to browse it or to search for something that's interesting to you. If you find a good tutorial that is not in the database, please contribute it by filling this form. If you are uncertain about what tutorial would suit you, a tutor might be able to help you.
| Name |
Language |
Level |
| Introduction to Python Programming (Bio-IT) |
Python |
Beginner |
| A Byte of Python |
Python |
Beginner |
| Bayesian Methods for Hackers |
python |
Intermediate, Advanced |
| BioImage Data Analysis |
Fiji, MATLAB |
Beginner, Intermediate |
| Basic Python syntax and objects |
python |
Beginner, Intermediate |
| Dive into Python3 |
Python |
Intermediate, Advanced |
| Fundamentals of MATLAB |
MATLAB |
Beginner |
| Hello Biosphere - Programming in Biology |
python |
Beginner |
| Intermediate Command Line Computing |
Bash |
Intermediate |
| Introduction to Command Line Computing (Bio-IT) |
Bash |
Beginner |
| Mathematical Modelling in Systems Biology |
MATLAB |
Intermediate |
| MATLAB tutorial |
MATLAB |
Beginner |
| Metabolic Networks Modelling |
python, COBRApy |
Intermediate |
| Points of Significance |
not applicable |
Beginner, Intermediate, Advanced |
| Project Euler |
any |
Beginner, Intermediate, Advanced |
| Python Course |
python |
Beginner, Intermediate, Advanced |
| Python Workshop Image Processing |
Python |
Beginner, Intermediate |
| Spatio-Temporal Modelling in Biology |
MATLAB |
Advanced |
| The Python Challenge |
python, any |
Beginner, Intermediate, Advanced |
| The Python Tutorial |
python |
Beginner, Intermediate |
| SciPy Tutorial |
Python |
Intermediate, Advanced |
| SciPy Cookbook |
python |
Intermediate, Advanced |
| Introduction to R |
R |
Beginner |
| NumPy User Guide |
python |
Intermediate, Advanced |
| Pandas Tutorial Overview |
python |
Intermediate, Advanced |
| Data Handling with R |
R |
Beginner, Intermediate |
| SymPy Tutorial |
python |
Intermediate, Advanced |
| Exploratory data analysis and ggplot2 |
R |
Beginner, Intermediate |
| Statistical methods for Bioinformatics |
R |
Intermediate |
| Hypothesis Testing |
R |
Intermediate, Advanced |
| Matplotlib Beginner's Guide |
python |
Intermediate, Advanced |
| HTML(5) Tutorial |
HTML |
Beginner, Intermediate, Advanced |
| Differential expression analysis of RNA-Seq data with DESeq2 |
R |
Intermediate, Advanced |
| Computational Methods for Nonlinear Systems |
python, any |
Advanced |
| Machine Learning Introduction |
R |
Beginner, Intermediate |
| Biopython Tutorial and Cookbook |
python |
Beginner, Intermediate, Advanced |
| Molecular Modeling Toolkit (MMTK) User Guide |
python |
Intermediate, Advanced |
| Linear algebra |
none |
Beginner |
| Machine Learning with Python's scikit-learn |
python |
Intermediate, Advanced |
| Basic Git Workflow |
Git |
Beginner |
| Differential equations |
none |
Beginner |
| git - the simple guide |
Git |
Beginner, Intermediate, Advanced |
| Become a git guru |
git |
Beginner, Intermediate, Advanced |
| networkx tutorial |
python |
Intermediate, Advanced |
| Homology Modelling with MODELLER |
python |
Intermediate |
| Interactive Image Analysis with SimpleITK and IPython Notebooks |
Python |
Intermediate, Advanced |
| Programming Basics |
JavaScript |
Beginner |
| Modeling Biology with SimBiology: An Introduction for iGEM Teams |
MATLAB |
Beginner, Intermediate |
| Regular Expressions Tutorial |
Any |
Beginner, Intermediate |
| Matlab: A Practical Introduction to Programming and Problem Solving |
MATLAB |
Beginner, Intermediate |
| MATLAB Demystified |
MATLAB |
Beginner, Intermediate |
| A Mathematical Model of a Synthetically Constructed Genetic Toggle Switch |
MATLAB |
Intermediate |
| Modelling in Biology |
None |
Intermediate, Advanced |
| Rosalind |
Any |
Beginner, Intermediate, Advanced |
